Index

A

addAnthropoInputParameters() (pyCGM2.Model.model.Model method), [1] addCalibrationMarkerLabel() (pyCGM2.Model.model.Segment method), [1] addChain() (pyCGM2.Model.model.Model method), [1] addExternalDeviceWrench() (pyCGM2.Model.model.Segment method), [1] addForcePlateGeneralEvents() (in module pyCGM2.ForcePlates.forceplates), [1] addJoint() (pyCGM2.Model.model.Model method), [1] addMotionFrame() (pyCGM2.Model.model.Referential method), [1] addNode() (pyCGM2.Model.frame.Frame method), [1] addNormalActivationLayer() (in module pyCGM2.Report.plot), [1] addSegment() (pyCGM2.Model.model.Model method), [1] addTechnicalReferential() (pyCGM2.Model.model.Segment method), [1] addTemporalNormalActivationLayer() (in module pyCGM2.Report.plot), [1] addTrackingMarkerLabel() (pyCGM2.Model.model.Segment method), [1] AmplitudesProcedure (class in pyCGM2.EMG.discreteEmgProcedures), [1] analog_descriptiveStats() (in module pyCGM2.Processing.cycle), [1] Analysis (class in pyCGM2.Processing.analysis), [1] AnalysisBuilder (class in pyCGM2.Processing.analysis), [1] AnalysisExportFilter (class in pyCGM2.Processing.exporter), [1] AnalysisFilter (class in pyCGM2.Processing.analysis), [1]

AnatomicalReferential (class in pyCGM2.Model.model), [1] AngleAxisFromMatrix() (in module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils) AngleAxisFromQuaternion() (in module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils) angleAxisFromQuaternion() (in module pyCGM2.Model.frame), [1] AnkleCalibrationDecorator (class in pyCGM2.Model.modelDecorator), [1] anomaly_rolling() (in module pyCGM2.Signal.anomaly), [1] AnomalyCorrectionFilter (class in pyCGM2.Anomaly.anomalyFilters), [1] AnomalyDetectionFilter (class in pyCGM2.Anomaly.anomalyFilters), [1] AnomalyDetectionProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures), [1] AnthropoDataAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures), [1] appendForcePlateCornerAsMarker() (in module pyCGM2.ForcePlates.forceplates), [1] applyBasicDecorators() (in module pyCGM2.Model.CGM2.decorators), [1] applyHJCDecorators() (in module pyCGM2.Model.CGM2.decorators), [1] applyOnValidFrames() (in module pyCGM2.Tools.btkTools), [1] applyRotation() (in module pyCGM2.Tools.btkTools), [1] applyTranslators() (in module pyCGM2.Tools.btkTools), [1] applyValidFramesOnOutput() (in module pyCGM2.Tools.btkTools), [1] arrayLowPassFiltering() (in module pyCGM2.Signal.signal_processing), [1] automaticKineticDetection() (in module pyCGM2.Tools.btkTools), [1]

B

BasicEmgProcessingFilter (class in pyCGM2.EMG.emgFilters), [1] bell() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1] bellRegression() (in module pyCGM2.Model.modelDecorator), [1] BenedettiProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures), [1]

Bsp (class in pyCGM2.Model.bodySegmentParameters), [1] build() (pyCGM2.Processing.analysis.AnalysisFilter method), [1] (pyCGM2.Processing.cycle.CyclesFilter method), [1] buildTrials() (in module pyCGM2.Tools.btkTools), [1]

C

C3dManager (class in pyCGM2.Processing.C3dManager.c3dManagerFilters), [1] C3dManagerFilter (class in pyCGM2.Processing.C3dManager.c3dManagerFilters), [1] calibrate() (in module pyCGM2.Lib.CGM.cgm1) (in module pyCGM2.Lib.CGM.cgm1_1) (in module pyCGM2.Lib.CGM.cgm2_1) (in module pyCGM2.Lib.CGM.cgm2_2) (in module pyCGM2.Lib.CGM.cgm2_3) (in module pyCGM2.Lib.CGM.cgm2_4) (in module pyCGM2.Lib.CGM.cgm2_5) (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_3 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1] calibrate2dof() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method), [1] calibration2Dof() (in module pyCGM2.Lib.CGM.kneeCalibration) (in module pyCGM2.Model.modelDecorator), [1] calibrationProcedure() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] CentreOfMassFilter (class in pyCGM2.Model.modelFilters), [1] CGM (class in pyCGM2.Model.CGM2.cgm), [1] CGM1 (class in pyCGM2.Model.CGM2.cgm), [1] CGM1_GPS (class in pyCGM2.Processing.Scores.scoreProcedures), [1] Cgm1ManualOffsets (class in pyCGM2.Model.modelDecorator), [1] CGM2_1 (class in pyCGM2.Model.CGM2.cgm2), [1] CGM2_2 (class in pyCGM2.Model.CGM2.cgm2), [1] CGM2_3 (class in pyCGM2.Model.CGM2.cgm2), [1] CGM2_4 (class in pyCGM2.Model.CGM2.cgm2), [1] CGM2_5 (class in pyCGM2.Model.CGM2.cgm2), [1] CGMLowerlimbInverseDynamicProcedure (class in pyCGM2.Model.modelFilters), [1] CgmOpensimCalibrationProcedures (class in pyCGM2.Model.Opensim.opensimFilters), [1] CgmOpensimFittingProcedure (class in pyCGM2.Model.Opensim.opensimFilters), [1] changeSubjectName() (in module pyCGM2.Tools.btkTools), [1] checkForcePlateExist() (in module pyCGM2.Tools.btkTools), [1] checkGap() (in module pyCGM2.Tools.btkTools), [1] checkMarkers() (in module pyCGM2.Tools.btkTools), [1] checkMetadata() (in module pyCGM2.Tools.btkTools), [1] checkMultipleSubject() (in module pyCGM2.Tools.btkTools), [1] ClassificationFilter (class in pyCGM2.Processing.Classification.classificationFilters), [1] cleanAcq() (in module pyCGM2.Tools.btkTools), [1] clear() (pyCGM2.Tools.pythonTools.ordict method), [1] ClearAllEvents() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) clearEvents() (in module pyCGM2.Tools.btkTools), [1] clearPoints() (in module pyCGM2.Tools.btkTools), [1] ClinicalDescriptor (class in pyCGM2.Model.model), [1] CloseTrial() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) CoactivationEmgPlotViewer (class in pyCGM2.Report.Viewers.emgPlotViewers), [1] compareEmgEnvelops() (in module pyCGM2.Lib.plot) compareKinematic() (in module pyCGM2.Lib.plot) compareKinetic() (in module pyCGM2.Lib.plot) compareSelectedEmgEvelops() (in module pyCGM2.Lib.plot) compute() (pyCGM2.Model.bodySegmentParameters.Bsp method), [1] (pyCGM2.Model.modelDecorator.Cgm1ManualOffsets method), [1] (pyCGM2.Model.modelDecorator.Kad method), [1] (pyCGM2.Model.modelFilters.CentreOfMassFilter method), [1] (pyCGM2.Model.modelFilters.ForcePlateAssemblyFilter method), [1] (pyCGM2.Model.modelFilters.InverseDynamicFilter method), [1] (pyCGM2.Model.modelFilters.JointPowerFilter method), [1] (pyCGM2.Model.modelFilters.ModelAbsoluteAnglesFilter method), [1] (pyCGM2.Model.modelFilters.ModelCalibrationFilter method), [1] (pyCGM2.Model.modelFilters.ModelJCSFilter method), [1] (pyCGM2.Model.modelFilters.ModelMotionFilter method), [1] (pyCGM2.Model.modelQualityFilter.ScoreResidualFilter method), [1] (pyCGM2.Processing.ProgressionFrame.progressionFrameFilters.ProgressionFrameFilter method), [1]

computeEmgEnvelopes() (pyCGM2.Processing.analysis.AnalysisBuilder method), [1] (pyCGM2.Processing.analysis.GaitAnalysisBuilder method), [1] computeGlobal() (pyCGM2.Model.frame.Node method), [1] computeKinematics() (pyCGM2.Processing.analysis.AnalysisBuilder method), [1] (pyCGM2.Processing.analysis.GaitAnalysisBuilder method), [1] computeKinetics() (pyCGM2.Processing.analysis.AnalysisBuilder method), [1] (pyCGM2.Processing.analysis.GaitAnalysisBuilder method), [1] computeLocal() (pyCGM2.Model.frame.Node method), [1] computeMotion() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1] computeOptimizedSegmentMotion() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1] computeSpatioTemporel() (pyCGM2.Processing.analysis.GaitAnalysisBuilder method), [1] configure() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] Connect() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) consistencyPlot() (in module pyCGM2.Report.plot), [1] construcGaitCycle() (in module pyCGM2.Processing.cycle), [1] constructMarker() (in module pyCGM2.Tools.btkTools), [1] constructPhantom() (in module pyCGM2.Tools.btkTools), [1] copy() (pyCGM2.Tools.pythonTools.ordict method), [1] copyNode() (pyCGM2.Model.frame.Frame method), [1] copyPaste() (in module pyCGM2.Utils.files), [1] copyPasteDirectory() (in module pyCGM2.Utils.files), [1] copySessionFolder() (in module pyCGM2.Utils.files), [1] correct() (pyCGM2.Model.modelFilters.ModelMotionCorrectionFilter method), [1] correctForcePlateType5() (in module pyCGM2.ForcePlates.forceplates), [1] Create() (pyCGM2.External.NexusSDK.viconnexusutils.NexusObject.NexusObject method) CreateAnalysisParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) CreateAnEvent() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) createDir() (in module pyCGM2.Utils.files), [1] CreateModeledMarker() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) CreateModelOutput() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) createPhantoms() (in module pyCGM2.Tools.btkTools), [1] CreateSubjectParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) custom() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1] Cycle (class in pyCGM2.Processing.cycle), [1] Cycles (class in pyCGM2.Processing.cycle), [1] CyclesBuilder (class in pyCGM2.Processing.cycle), [1] CyclesFilter (class in pyCGM2.Processing.cycle), [1]

D

davis() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1] davisRegression() (in module pyCGM2.Model.modelDecorator), [1] DecoratorModel (class in pyCGM2.Model.modelDecorator), [1] deleteContextEvents() (in module pyCGM2.Tools.btkTools), [1] deleteDirectory() (in module pyCGM2.Utils.files), [1] descriptivePlot() (in module pyCGM2.Report.plot), [1] detect() (pyCGM2.EMG.discreteEmgProcedures.AmplitudesProcedure method), [1] (pyCGM2.Events.eventFilters.EventFilter method), [1] (pyCGM2.Events.eventProcedures.ZeniProcedure method), [1] (pyCGM2.Processing.DiscretePoints.discretePointProcedures.BenedettiProcedure method), [1] (pyCGM2.Processing.DiscretePoints.discretePointProcedures.GoldbergProcedure method), [1] (pyCGM2.Processing.DiscretePoints.discretePointProcedures.MaxMinProcedure method), [1]

detect_cusum() (in module pyCGM2.Signal.detect_changes), [1] detect_onset() (in module pyCGM2.Signal.detect_onset), [1] detect_peaks() (in module pyCGM2.Signal.detect_peaks), [1] detectCalibrationMethods() (pyCGM2.Model.CGM2.cgm.CGM class method), [1] detectMeasurementType() (in module pyCGM2.QTM.qtmTools), [1] Disconnect() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) DiscreteEMGFilter (class in pyCGM2.EMG.emgFilters), [1] DiscretePointsFilter (class in pyCGM2.Processing.DiscretePoints.discretePointFilters), [1] displayStaticCoordinateSystem() (pyCGM2.Model.model.Model method), [1] DistinctC3dSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures), [1] downSampleExternalDeviceWrenchs() (pyCGM2.Model.model.Segment method), [1]

E

EmgCoActivationFilter (class in pyCGM2.EMG.emgFilters), [1] EmgEnvelopProcessingFilter (class in pyCGM2.EMG.emgFilters), [1] EmgManager (class in pyCGM2.EMG.emgManager), [1] EmgNormalisationProcessingFilter (class in pyCGM2.EMG.emgFilters), [1] enableEmg() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method), [1] enableKinematic() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method), [1] enableKinetic() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method), [1] enableSpatioTemporal() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method), [1]

enveloppe() (in module pyCGM2.Signal.signal_processing), [1] EnvEmgGaitPlotPanelViewer (class in pyCGM2.Report.Viewers.emgPlotViewers), [1] eraseNodes() (pyCGM2.Model.frame.Frame method), [1] EulerFromMatrix() (in module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils) EventFilter (class in pyCGM2.Events.eventFilters), [1] export() (pyCGM2.Processing.exporter.AnalysisExportFilter method), [1] (pyCGM2.Processing.exporter.XlsAnalysisExportFilter method), [1] (pyCGM2.Processing.exporter.XlsExportDataFrameFilter method), [1] exportAnalysis() (in module pyCGM2.Lib.analysis)

F

FalconerCoActivationProcedure (class in pyCGM2.EMG.coactivationProcedures), [1] fill() (pyCGM2.Gap.gapFilters.GapFillingFilter method), [1] findDynamic() (in module pyCGM2.QTM.qtmTools), [1] findKneeCalibration() (in module pyCGM2.QTM.qtmTools), [1] findMarkerGap() (in module pyCGM2.Tools.btkTools), [1] findStatic() (in module pyCGM2.QTM.qtmTools), [1] findValidFrames() (in module pyCGM2.Tools.btkTools), [1] fitting() (in module pyCGM2.Lib.CGM.cgm1) (in module pyCGM2.Lib.CGM.cgm1_1) (in module pyCGM2.Lib.CGM.cgm2_1) (in module pyCGM2.Lib.CGM.cgm2_2) (in module pyCGM2.Lib.CGM.cgm2_3) (in module pyCGM2.Lib.CGM.cgm2_4) (in module pyCGM2.Lib.CGM.cgm2_5)

footJointCentreFromMet() (in module pyCGM2.Model.modelDecorator), [1] ForcePlateAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures), [1] ForcePlateAssemblyFilter (class in pyCGM2.Model.modelFilters), [1] forcePlateFiltering() (in module pyCGM2.Signal.signal_processing), [1] ForcePlateIntegration() (in module pyCGM2.ForcePlates.forceplates), [1] Frame (class in pyCGM2.Model.frame), [1] fromAjcMarker() (pyCGM2.Model.modelDecorator.AnkleCalibrationDecorator method), [1] fromHjcMarker() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1] fromKjcMarker() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method), [1]

G

GaitAnalysisBuilder (class in pyCGM2.Processing.analysis), [1] gaitConsistencyPlot() (in module pyCGM2.Report.plot), [1] GaitCycle (class in pyCGM2.Processing.cycle), [1] GaitCyclesBuilder (class in pyCGM2.Processing.cycle), [1] gaitDescriptivePlot() (in module pyCGM2.Report.plot), [1] GaitEventAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures), [1] gaitMeanPlot() (in module pyCGM2.Report.plot), [1] GapFillingFilter (class in pyCGM2.Gap.gapFilters), [1] GeneralCalibrationProcedure (class in pyCGM2.Model.modelFilters), [1] GeneralOpensimCalibrationProcedure (class in pyCGM2.Model.Opensim.opensimFilters), [1] GeneralOpensimFittingProcedure (class in pyCGM2.Model.Opensim.opensimFilters), [1] GeneralScoreResidualProcedure (class in pyCGM2.Model.modelQualityFilter), [1] generate() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method), [1] (pyCGM2.Processing.C3dManager.c3dManagerProcedures.DistinctC3dSetProcedure method), [1] (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueBtkAcqSetProcedure method), [1] (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueC3dSetProcedure method), [1] get_markerLabelForPiGStatic() (pyCGM2.Model.CGM2.cgm.CGM class method), [1] getAbdAddAnkleJointOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getAllParamAnalysis() (in module pyCGM2.Tools.btkTools), [1] GetAnalogNames() (in module pyCGM2.Tools.btkTools), [1] getAnalogTimeSequenceData() (pyCGM2.Processing.cycle.Cycle method), [1] getAnalogTimeSequenceDataNormalized() (pyCGM2.Processing.cycle.Cycle method), [1] GetAnalysisParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetAnalysisParamDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetAnalysisParamNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getAnalysisSection() (in module pyCGM2.Processing.analysisHandler), [1] getAngleAxis() (pyCGM2.Model.frame.Frame method), [1] getAngularAcceleration() (pyCGM2.Model.model.Segment method), [1] getAngularVelocity() (pyCGM2.Model.model.Segment method), [1] getBodyPart() (pyCGM2.Model.model.Model method), [1] getC3dFiles() (in module pyCGM2.Utils.files), [1] getCentreOfMass() (pyCGM2.Model.model.Model method), [1] getChannels() (pyCGM2.EMG.emgManager.EmgManager method), [1] getChannelSection() (pyCGM2.EMG.emgManager.EmgManager method), [1] getClinicalDescriptor() (pyCGM2.Model.model.Model method), [1] getComAcceleration() (pyCGM2.Model.model.Segment method), [1] getComTrajectory() (pyCGM2.Model.model.Segment method), [1] getComVelocity() (pyCGM2.Model.model.Segment method), [1] getDescription() (pyCGM2.Model.frame.Node method), [1] GetDeviceChannel() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelForFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelGlobal() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelGlobalAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelGlobalForFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceChannelIDFromName() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceIDFromName() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceIDs() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceOutputDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetDeviceOutputIDFromName() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getDirs() (in module pyCGM2.Utils.files), [1] getEmg() (pyCGM2.Processing.cycle.CyclesBuilder method), [1] (pyCGM2.Processing.cycle.GaitCyclesBuilder method), [1] GetEvents() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getEvents() (pyCGM2.Processing.cycle.Cycle method), [1] getFileCreationDate() (in module pyCGM2.Utils.files), [1] getFilename() (in module pyCGM2.QTM.qtmTools), [1] getFiles() (in module pyCGM2.Utils.files), [1] getFootOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getForcePlateAssigment() (in module pyCGM2.QTM.qtmTools), [1] getForcePlateWrench() (in module pyCGM2.Tools.btkTools), [1] getFrameBoundaries() (in module pyCGM2.Tools.btkTools), [1] GetFrameCount() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetFrameRate() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getGlobal() (pyCGM2.Model.frame.Node method), [1] getGlobalPosition() (pyCGM2.Model.frame.Frame method), [1] getHindFootOffset() (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1] getIKweightSet() (in module pyCGM2.Utils.files), [1] getJoint() (pyCGM2.Model.model.Model method), [1] GetJointDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getJointList() (pyCGM2.Model.model.Model method), [1] GetJointNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getKinematics() (pyCGM2.Processing.cycle.CyclesBuilder method), [1] (pyCGM2.Processing.cycle.GaitCyclesBuilder method), [1] getKinetics() (pyCGM2.Processing.cycle.CyclesBuilder method), [1] (pyCGM2.Processing.cycle.GaitCyclesBuilder method), [1]

getKneeFunctionCalibMethod() (in module pyCGM2.QTM.qtmTools), [1] getLabel() (pyCGM2.Model.frame.Node method), [1] getLocal() (pyCGM2.Model.frame.Node method), [1] GetMarkerNames() (in module pyCGM2.Tools.btkTools), [1] (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetModelOutput() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetModelOutputAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetModelOutputDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetModelOutputNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getMp() (in module pyCGM2.Utils.files), [1] getMpFileContent() (in module pyCGM2.Utils.files), [1] getMuscles() (pyCGM2.EMG.emgManager.EmgManager method), [1] getNode_byIndex() (pyCGM2.Model.frame.Frame method), [1] getNode_byLabel() (pyCGM2.Model.frame.Frame method), [1] getNodeIndex() (pyCGM2.Model.frame.Frame method), [1] getNodeLabels() (pyCGM2.Model.frame.Frame method), [1] getNodes() (pyCGM2.Model.frame.Frame method), [1] getNodeTrajectory() (pyCGM2.Model.model.Referential method), [1] getNormalActivity() (pyCGM2.EMG.emgManager.EmgManager method), [1] getNormalBurstActivity() (in module pyCGM2.EMG.normalActivation), [1] getNormalBurstActivity_fromCycles() (in module pyCGM2.EMG.normalActivation), [1] getNumberOfCycle() (in module pyCGM2.Processing.analysisHandler), [1] getNumberOfForcePlate() (in module pyCGM2.Tools.btkTools), [1] getNumberOfModelOutputs() (in module pyCGM2.Tools.btkTools), [1] getOriginTrajectory() (pyCGM2.Model.model.Referential method), [1] getOutput() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method), [1] (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method), [1] getParamAnalysis() (in module pyCGM2.Tools.btkTools), [1] getPhases() (in module pyCGM2.Processing.analysisHandler), [1] getPointTimeSequenceData() (pyCGM2.Processing.cycle.Cycle method), [1] getPointTimeSequenceDataNormalized() (pyCGM2.Processing.cycle.Cycle method), [1] getProcessingSection() (pyCGM2.EMG.emgManager.EmgManager method), [1] getProperty() (pyCGM2.Model.model.Model method), [1] getQuaternionFromMatrix() (in module pyCGM2.Model.frame), [1] getReferential() (pyCGM2.Model.model.Segment method), [1] GetRootSegment() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getRotation() (pyCGM2.Model.frame.Frame method), [1] getSegment() (pyCGM2.Model.model.Model method), [1] getSegmentByIndex() (pyCGM2.Model.model.Model method), [1] GetSegmentDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getSegmentIndex() (pyCGM2.Model.model.Model method), [1] getSegmentList() (pyCGM2.Model.model.Model method), [1] GetSegmentNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetServerInfo() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getShankOffsets() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getSides() (pyCGM2.EMG.emgManager.EmgManager method), [1] getSpatioTemporal() (pyCGM2.Processing.cycle.CyclesBuilder method), [1] (pyCGM2.Processing.cycle.GaitCyclesBuilder method), [1] getSpatioTemporalParameter() (pyCGM2.Processing.cycle.GaitCycle method), [1] GetSplineResults() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getStartEndEvents() (in module pyCGM2.Tools.btkTools), [1] getStaticIkTargets() (pyCGM2.Model.CGM2.cgm2.CGM2_2 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_3 method), [1] getStaticMarkers() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getStaticTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM method), [1] GetSubjectInfo() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetSubjectNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetSubjectParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetSubjectParamDetails() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetSubjectParamNames() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getThighOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getTibialTorsionOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] getTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] GetTrajectory() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetTrajectoryAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getTranslation() (pyCGM2.Model.frame.Frame method), [1] getTranslators() (in module pyCGM2.Utils.files), [1] GetTrialName() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetTrialRange() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetTrialRegionOfInterest() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetUnlabeled() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) GetUnlabeledCount() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) getValidFrames() (in module pyCGM2.Tools.btkTools), [1] getValues() (in module pyCGM2.Processing.analysisHandler), [1] getVisibleMarkersAtFrame() (in module pyCGM2.Tools.btkTools), [1] globalTransformationLabToOsim() (in module pyCGM2.Model.Opensim.osimProcessing), [1] GoldbergProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures), [1] GpsMapPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1]

H

hara() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1] haraRegression() (in module pyCGM2.Model.modelDecorator), [1] harrington() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method), [1]

harringtonRegression() (in module pyCGM2.Model.modelDecorator), [1] HasTrajectory() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) highPass() (in module pyCGM2.Signal.signal_processing), [1] HipJointCenterDecorator (class in pyCGM2.Model.modelDecorator), [1]

I

ignoreNormalActivty() (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method), [1] InspectorFilter (class in pyCGM2.Inspector.inspectorFilters), [1] InverseDynamicFilter (class in pyCGM2.Model.modelFilters), [1] isAnalogExist() (in module pyCGM2.Tools.btkTools), [1] isCalibrationProperty() (pyCGM2.Model.model.Model method), [1] IsConnected() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) isExternalDeviceWrenchsConnected() (pyCGM2.Model.model.Segment method), [1] isGap() (in module pyCGM2.Tools.btkTools), [1] isInRange() (in module pyCGM2.Utils.utils), [1] isKeyExist() (in module pyCGM2.Processing.analysisHandler), [1]

isKineticFlag() (in module pyCGM2.Tools.btkTools), [1] isNodeExist() (pyCGM2.Model.frame.Frame method), [1] isPhantom() (in module pyCGM2.Tools.btkTools), [1] isPointExist() (in module pyCGM2.Tools.btkTools), [1] isPointsExist() (in module pyCGM2.Tools.btkTools), [1] isProperty() (pyCGM2.Model.model.Model method), [1] isType() (in module pyCGM2.QTM.qtmTools), [1] items() (pyCGM2.Tools.pythonTools.ordict method), [1] iteritems() (pyCGM2.Tools.pythonTools.ordict method), [1] iterkeys() (pyCGM2.Tools.pythonTools.ordict method), [1] itervalues() (pyCGM2.Tools.pythonTools.ordict method), [1]

J

Joint (class in pyCGM2.Model.model), [1]

JointPatternFilter (class in pyCGM2.Processing.JointPatterns.jointPatternFilters), [1] JointPowerFilter (class in pyCGM2.Model.modelFilters), [1]

K

Kad (class in pyCGM2.Model.modelDecorator), [1] keepAndDeleteOtherPoints() (in module pyCGM2.Tools.btkTools), [1] keys() (pyCGM2.Tools.pythonTools.ordict method), [1]

KinematicsPlotComparisonViewer (class in pyCGM2.Report.Viewers.comparisonPlotViewers), [1] KineticsPlotComparisonViewer (class in pyCGM2.Report.Viewers.comparisonPlotViewers), [1] KneeCalibrationDecorator (class in pyCGM2.Model.modelDecorator), [1]

L

loadAnalysis() (in module pyCGM2.Utils.files), [1] loadEmg() (in module pyCGM2.Lib.emg)

loadModel() (in module pyCGM2.Utils.files), [1] loadModelSettings() (in module pyCGM2.Utils.files), [1] LowDimensionalKalmanFilterProcedure (class in pyCGM2.Gap.gapFillingProcedures), [1]

M

makeAnalysis() (in module pyCGM2.Lib.analysis) MarkerAnomalyCorrectionProcedure (class in pyCGM2.Anomaly.anomalyCorrectionProcedures), [1] MarkerAnomalyDetectionRollingProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures), [1] markerFiltering() (in module pyCGM2.Signal.signal_processing), [1] MarkerPresenceDetectionProcedure (class in pyCGM2.Inspector.inspectorProcedures), [1] markerUnitConverter() (in module pyCGM2.Tools.btkTools), [1] matchingFootSideOnForceplate() (in module pyCGM2.ForcePlates.forceplates), [1] MaxMinProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures), [1] meanPlot() (in module pyCGM2.Report.plot), [1] midCondyles() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method), [1] midCondyles_KAD() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method), [1] midMaleolus() (pyCGM2.Model.modelDecorator.AnkleCalibrationDecorator method), [1] midPoint() (in module pyCGM2.Model.modelDecorator), [1] Model (class in pyCGM2.Model.model), [1] Model6Dof (class in pyCGM2.Model.model), [1] ModelAbsoluteAnglesFilter (class in pyCGM2.Model.modelFilters), [1] ModelCalibrationFilter (class in pyCGM2.Model.modelFilters), [1] ModelJCSFilter (class in pyCGM2.Model.modelFilters), [1] ModelMotionCorrectionFilter (class in pyCGM2.Model.modelFilters), [1] ModelMotionFilter (class in pyCGM2.Model.modelFilters), [1] ModelScoreResidualProcedure (class in pyCGM2.Model.modelQualityFilter), [1] modifyEventSubject() (in module pyCGM2.Tools.btkTools), [1] modifySubject() (in module pyCGM2.Tools.btkTools), [1] module pyCGM2.Anomaly.anomalyCorrectionProcedures, [1] pyCGM2.Anomaly.anomalyDetectionProcedures, [1] pyCGM2.Anomaly.anomalyFilters, [1] pyCGM2.EMG.coactivationProcedures, [1] pyCGM2.EMG.discreteEmgProcedures, [1] pyCGM2.EMG.emgFilters, [1] pyCGM2.EMG.emgManager, [1] pyCGM2.EMG.normalActivation, [1] pyCGM2.Events.eventFilters, [1] pyCGM2.Events.eventProcedures, [1] pyCGM2.External.NexusSDK.viconnexusapi.NexusForcePlate pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils pyCGM2.External.NexusSDK.viconnexusutils.NexusObject pyCGM2.ForcePlates.forceplates, [1] pyCGM2.Gap.gapFillingProcedures, [1] pyCGM2.Gap.gapFilters, [1] pyCGM2.Inspector.inspectorFilters, [1] pyCGM2.Inspector.inspectorProcedures, [1] pyCGM2.Lib.analysis pyCGM2.Lib.CGM.cgm1 pyCGM2.Lib.CGM.cgm1_1 pyCGM2.Lib.CGM.cgm2_1 pyCGM2.Lib.CGM.cgm2_2 pyCGM2.Lib.CGM.cgm2_3 pyCGM2.Lib.CGM.cgm2_4 pyCGM2.Lib.CGM.cgm2_5 pyCGM2.Lib.CGM.kneeCalibration pyCGM2.Lib.emg pyCGM2.Lib.eventDetector pyCGM2.Lib.plot pyCGM2.Lib.report pyCGM2.Model.anthropometricMeasurement, [1] pyCGM2.Model.bodySegmentParameters, [1] pyCGM2.Model.CGM2.cgm, [1] pyCGM2.Model.CGM2.cgm2, [1] pyCGM2.Model.CGM2.decorators, [1] pyCGM2.Model.frame, [1] pyCGM2.Model.model, [1] pyCGM2.Model.modelDecorator, [1] pyCGM2.Model.modelFilters, [1] pyCGM2.Model.modelQualityFilter, [1] pyCGM2.Model.motion, [1] pyCGM2.Model.Opensim.opensimFilters, [1] pyCGM2.Model.Opensim.osimProcessing, [1] pyCGM2.Processing.analysis, [1] pyCGM2.Processing.analysisHandler, [1] pyCGM2.Processing.analysisProcessing, [1] pyCGM2.Processing.C3dManager.c3dManagerFilters, [1] pyCGM2.Processing.C3dManager.c3dManagerProcedures, [1] pyCGM2.Processing.Classification.classificationFilters, [1] pyCGM2.Processing.Classification.classificationProcedures, [1] pyCGM2.Processing.cycle, [1] pyCGM2.Processing.DiscretePoints.discretePointFilters, [1] pyCGM2.Processing.DiscretePoints.discretePointProcedures, [1] pyCGM2.Processing.exporter, [1] pyCGM2.Processing.JointPatterns.jointPatternFilters, [1] pyCGM2.Processing.JointPatterns.jointPatternProcedures, [1] pyCGM2.Processing.ProgressionFrame.progressionFrameFilters, [1] pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures, [1] pyCGM2.Processing.Representative.representativeFilters, [1] pyCGM2.Processing.Representative.representativeProcedures, [1] pyCGM2.Processing.Scores.scoreFilters, [1] pyCGM2.Processing.Scores.scoreProcedures, [1] pyCGM2.QTM.qtmTools, [1] pyCGM2.Report.normativeDatasets, [1] pyCGM2.Report.plot, [1] pyCGM2.Report.plotFilters, [1] pyCGM2.Report.plotUtils, [1] pyCGM2.Report.Viewers.comparisonPlotViewers, [1] pyCGM2.Report.Viewers.emgPlotViewers, [1] pyCGM2.Report.Viewers.plotViewers, [1] pyCGM2.Signal.anomaly, [1] pyCGM2.Signal.detect_changes, [1] pyCGM2.Signal.detect_onset, [1] pyCGM2.Signal.detect_peaks, [1] pyCGM2.Signal.signal_processing, [1] pyCGM2.Tools.btkTools, [1] pyCGM2.Tools.pythonTools, [1] pyCGM2.Utils.files, [1] pyCGM2.Utils.utils, [1]

mot2pointValues() (in module pyCGM2.Model.Opensim.osimProcessing), [1] MultipleAnalysis_EnvEmgPlotPanelViewer (class in pyCGM2.Report.Viewers.emgPlotViewers), [1]

N

Naim2019ThighMisaligmentCorrectionProcedure (class in pyCGM2.Model.modelFilters), [1] NexusObject (class in pyCGM2.External.NexusSDK.viconnexusutils.NexusObject) Node (class in pyCGM2.Model.frame), [1] normalizedEMG() (in module pyCGM2.Lib.emg)

NormalizedKinematicsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1] NormalizedKineticsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1] NormalSTP (class in pyCGM2.Report.normativeDatasets), [1] NormativeData (class in pyCGM2.Report.normativeDatasets), [1]

O

openFile() (in module pyCGM2.Utils.files), [1] openPickleFile() (in module pyCGM2.Utils.files), [1] opensimGeometry() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1]

opensimIkTask() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_3 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1] OpenTrial() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) ordict (class in pyCGM2.Tools.pythonTools), [1]

P

pdfGaitReport() (in module pyCGM2.Lib.report) PelvisProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures), [1] PFKEprocedure (class in pyCGM2.Processing.Classification.classificationProcedures), [1] plot() (pyCGM2.Processing.Classification.classificationProcedures.PFKEprocedure method), [1] (pyCGM2.Report.plotFilters.PlottingFilter method), [1] plot_ConsistencyKinematic() (in module pyCGM2.Lib.plot) plot_ConsistencyKinetic() (in module pyCGM2.Lib.plot) plot_DescriptiveKinematic() (in module pyCGM2.Lib.plot) plot_DescriptiveKinetic() (in module pyCGM2.Lib.plot) plot_MAP() (in module pyCGM2.Lib.plot) plot_spatioTemporal() (in module pyCGM2.Lib.plot) plotConsistencyEnvelopEMGpanel() (in module pyCGM2.Lib.plot) plotDescriptiveEnvelopEMGpanel() (in module pyCGM2.Lib.plot) plotPanel() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.GpsMapPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.SpatioTemporalPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.TemporalKinematicsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.TemporalKineticsPlotViewer method), [1] plotTemporalEMG() (in module pyCGM2.Lib.plot) plotTemporalKinematic() (in module pyCGM2.Lib.plot) plotTemporalKinetic() (in module pyCGM2.Lib.plot) PlottingFilter (class in pyCGM2.Report.plotFilters), [1] point_descriptiveStats() (in module pyCGM2.Processing.cycle), [1] PointProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures), [1] pop() (pyCGM2.Tools.pythonTools.ordict method), [1] popitem() (pyCGM2.Tools.pythonTools.ordict method), [1] processAnalysis() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] processC3d() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] processEMG() (in module pyCGM2.Lib.emg) processEMG_fromBtkAcq() (in module pyCGM2.Lib.emg) ProgressionFrameFilter (class in pyCGM2.Processing.ProgressionFrame.progressionFrameFilters), [1] pyCGM2.Anomaly.anomalyCorrectionProcedures module, [1] pyCGM2.Anomaly.anomalyDetectionProcedures module, [1] pyCGM2.Anomaly.anomalyFilters module, [1] pyCGM2.EMG.coactivationProcedures module, [1] pyCGM2.EMG.discreteEmgProcedures module, [1] pyCGM2.EMG.emgFilters module, [1] pyCGM2.EMG.emgManager module, [1] pyCGM2.EMG.normalActivation module, [1] pyCGM2.Events.eventFilters module, [1] pyCGM2.Events.eventProcedures module, [1] pyCGM2.External.NexusSDK.viconnexusapi.NexusForcePlate module pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils module pyCGM2.External.NexusSDK.viconnexusutils.NexusObject module pyCGM2.ForcePlates.forceplates module, [1] pyCGM2.Gap.gapFillingProcedures module, [1] pyCGM2.Gap.gapFilters module, [1] pyCGM2.Inspector.inspectorFilters module, [1] pyCGM2.Inspector.inspectorProcedures module, [1] pyCGM2.Lib.analysis module pyCGM2.Lib.CGM.cgm1 module pyCGM2.Lib.CGM.cgm1_1 module pyCGM2.Lib.CGM.cgm2_1 module pyCGM2.Lib.CGM.cgm2_2 module pyCGM2.Lib.CGM.cgm2_3 module pyCGM2.Lib.CGM.cgm2_4 module pyCGM2.Lib.CGM.cgm2_5 module pyCGM2.Lib.CGM.kneeCalibration module pyCGM2.Lib.emg module pyCGM2.Lib.eventDetector module pyCGM2.Lib.plot module

pyCGM2.Lib.report module pyCGM2.Model.anthropometricMeasurement module, [1] pyCGM2.Model.bodySegmentParameters module, [1] pyCGM2.Model.CGM2.cgm module, [1] pyCGM2.Model.CGM2.cgm2 module, [1] pyCGM2.Model.CGM2.decorators module, [1] pyCGM2.Model.frame module, [1] pyCGM2.Model.model module, [1] pyCGM2.Model.modelDecorator module, [1] pyCGM2.Model.modelFilters module, [1] pyCGM2.Model.modelQualityFilter module, [1] pyCGM2.Model.motion module, [1] pyCGM2.Model.Opensim.opensimFilters module, [1] pyCGM2.Model.Opensim.osimProcessing module, [1] pyCGM2.Processing.analysis module, [1] pyCGM2.Processing.analysisHandler module, [1] pyCGM2.Processing.analysisProcessing module, [1] pyCGM2.Processing.C3dManager.c3dManagerFilters module, [1] pyCGM2.Processing.C3dManager.c3dManagerProcedures module, [1] pyCGM2.Processing.Classification.classificationFilters module, [1] pyCGM2.Processing.Classification.classificationProcedures module, [1] pyCGM2.Processing.cycle module, [1] pyCGM2.Processing.DiscretePoints.discretePointFilters module, [1] pyCGM2.Processing.DiscretePoints.discretePointProcedures module, [1] pyCGM2.Processing.exporter module, [1] pyCGM2.Processing.JointPatterns.jointPatternFilters module, [1] pyCGM2.Processing.JointPatterns.jointPatternProcedures module, [1] pyCGM2.Processing.ProgressionFrame.progressionFrameFilters module, [1] pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures module, [1] pyCGM2.Processing.Representative.representativeFilters module, [1] pyCGM2.Processing.Representative.representativeProcedures module, [1] pyCGM2.Processing.Scores.scoreFilters module, [1] pyCGM2.Processing.Scores.scoreProcedures module, [1] pyCGM2.QTM.qtmTools module, [1] pyCGM2.Report.normativeDatasets module, [1] pyCGM2.Report.plot module, [1] pyCGM2.Report.plotFilters module, [1] pyCGM2.Report.plotUtils module, [1] pyCGM2.Report.Viewers.comparisonPlotViewers module, [1] pyCGM2.Report.Viewers.emgPlotViewers module, [1] pyCGM2.Report.Viewers.plotViewers module, [1] pyCGM2.Signal.anomaly module, [1] pyCGM2.Signal.detect_changes module, [1] pyCGM2.Signal.detect_onset module, [1] pyCGM2.Signal.detect_peaks module, [1] pyCGM2.Signal.signal_processing module, [1] pyCGM2.Tools.btkTools module, [1] pyCGM2.Tools.pythonTools module, [1] pyCGM2.Utils.files module, [1] pyCGM2.Utils.utils module, [1]

Q

QuaternionFromMatrix() (in module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils)

R

Read() (pyCGM2.External.NexusSDK.viconnexusutils.NexusObject.NexusObject method) readContent() (in module pyCGM2.Utils.files), [1] readXml() (in module pyCGM2.Utils.files), [1] rectify() (in module pyCGM2.Signal.signal_processing), [1] Referential (class in pyCGM2.Model.model), [1] remove50hz() (in module pyCGM2.Signal.signal_processing), [1] removeJoint() (pyCGM2.Model.model.Model method), [1] removeSegment() (pyCGM2.Model.model.Model method), [1] removeTrackingMarker() (pyCGM2.Model.model.Segment method), [1] RepresentativeCycleFilter (class in pyCGM2.Processing.Representative.representativeFilters), [1] RotationMatrixFromAngleAxis() (in module pyCGM2.External.NexusSDK.viconnexusapi.ViconUtils) run() (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure method), [1] (pyCGM2.Anomaly.anomalyDetectionProcedures.AnthropoDataAnomalyProcedure method), [1] (pyCGM2.Anomaly.anomalyDetectionProcedures.ForcePlateAnomalyProcedure method), [1] (pyCGM2.Anomaly.anomalyDetectionProcedures.GaitEventAnomalyProcedure method), [1] (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure method), [1] (pyCGM2.EMG.coactivationProcedures.FalconerCoActivationProcedure method), [1] (pyCGM2.EMG.coactivationProcedures.UnithanCoActivationProcedure method), [1] (pyCGM2.EMG.emgFilters.BasicEmgProcessingFilter method), [1] (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method), [1] (pyCGM2.EMG.emgFilters.EmgEnvelopProcessingFilter method), [1] (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] (pyCGM2.Processing.Classification.classificationFilters.ClassificationFilter method), [1] (pyCGM2.Processing.Classification.classificationProcedures.PFKEprocedure method), [1] (pyCGM2.Processing.Representative.representativeFilters.RepresentativeCycleFilter method), [1]

RunPipeline() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method)

S

Sangeux2015Procedure (class in pyCGM2.Processing.Representative.representativeProcedures), [1] sara() (in module pyCGM2.Lib.CGM.kneeCalibration) (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method), [1] saraCalibration() (in module pyCGM2.Model.modelDecorator), [1] saveAnalysis() (in module pyCGM2.Utils.files), [1] saveJson() (in module pyCGM2.Utils.files), [1] saveModel() (in module pyCGM2.Utils.files), [1] saveMp() (in module pyCGM2.Utils.files), [1] savePickleFile() (in module pyCGM2.Utils.files), [1] SaveTrial() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) ScoreFilter (class in pyCGM2.Processing.Scores.scoreFilters), [1] ScoreResidualFilter (class in pyCGM2.Model.modelQualityFilter), [1] Segment (class in pyCGM2.Model.model), [1] segmentalCompute() (pyCGM2.Model.modelFilters.ModelMotionFilter method), [1] segmentalLeastSquare() (in module pyCGM2.Model.motion), [1] selectEmgChannels() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method), [1] setAnalysisInstance() (pyCGM2.Processing.exporter.AnalysisExportFilter method), [1] (pyCGM2.Processing.exporter.XlsAnalysisExportFilter method), [1] SetAnalysisParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setAnatomicalDefinition() (pyCGM2.Model.modelFilters.GeneralCalibrationProcedure method), [1] setAutomaticYlimits() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] setBodyPart() (pyCGM2.Model.model.Model method), [1] setBuilder() (pyCGM2.Processing.analysis.AnalysisFilter method), [1] (pyCGM2.Processing.cycle.CyclesFilter method), [1] setC3ds() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] setCalibrationProperty() (pyCGM2.Model.model.Model method), [1] setCentreOfMass() (pyCGM2.Model.model.Model method), [1] setClinicalDescriptor() (pyCGM2.Model.model.Model method), [1] setCoactivationMethod() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method), [1] setComPosition() (pyCGM2.Model.model.Segment method), [1] setConcretePlotFunction() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method), [1] setCondExpInf() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method), [1] (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method), [1] setContext() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method), [1] setCutoffFrequency() (pyCGM2.EMG.emgFilters.EmgEnvelopProcessingFilter method), [1] setData() (pyCGM2.Processing.Representative.representativeProcedures.Sangeux2015Procedure method), [1] setDataFrames() (pyCGM2.Processing.exporter.XlsExportDataFrameFilter method), [1] setdefault() (pyCGM2.Tools.pythonTools.ordict method), [1] setDefaultData() (pyCGM2.Processing.Representative.representativeProcedures.Sangeux2015Procedure method), [1] setDefinition() (pyCGM2.Model.modelFilters.GeneralCalibrationProcedure method), [1] (pyCGM2.Model.modelQualityFilter.GeneralScoreResidualProcedure method), [1] setDescription() (pyCGM2.Model.frame.Node method), [1] SetDeviceChannel() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) SetDeviceChannelAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setEMG1() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method), [1] setEMG2() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method), [1] setEmgManager() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method), [1] setEmgRectify() (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method), [1] setEmgs() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method), [1] setEnableFlag() (pyCGM2.Processing.cycle.Cycle method), [1] setExport() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] setFootOffOffset() (pyCGM2.Events.eventProcedures.ZeniProcedure method), [1] setFootStrikeOffset() (pyCGM2.Events.eventProcedures.ZeniProcedure method), [1]

setFrameData() (in module pyCGM2.Model.frame), [1] setGeometry() (pyCGM2.Model.Opensim.opensimFilters.GeneralOpensimCalibrationProcedure method), [1] setGlobalTransormation_lab_osim() (in module pyCGM2.Model.Opensim.osimProcessing), [1] setHighPassFrequencies() (pyCGM2.EMG.emgFilters.BasicEmgProcessingFilter method), [1] setHorizontalLine() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] setInertiaTensor() (pyCGM2.Model.model.Segment method), [1] setInfo() (pyCGM2.Processing.analysis.AnalysisFilter method), [1] setLength() (pyCGM2.Model.model.Segment method), [1] setMarkers() (pyCGM2.Model.Opensim.opensimFilters.GeneralOpensimCalibrationProcedure method), [1] setMarkerWeight() (pyCGM2.Model.Opensim.opensimFilters.GeneralOpensimFittingProcedure method), [1] setMass() (pyCGM2.Model.model.Segment method), [1] setMaxMethod() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] setModelInfo() (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method), [1] SetModelOutput() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) SetModelOutputAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setMuscles() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method), [1] setNormalizedEmgFlag() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method), [1] (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method), [1] setNormativeDataset() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method), [1] (pyCGM2.Report.Viewers.plotViewers.SpatioTemporalPlotViewer method), [1] setParameters() (pyCGM2.Model.bodySegmentParameters.Bsp class method), [1] setProperty() (pyCGM2.Model.model.Model method), [1] setRelativeMatrixAnatomic() (pyCGM2.Model.model.TechnicalReferential method), [1] setRog() (pyCGM2.Model.model.Segment method), [1] setRotation() (pyCGM2.Model.frame.Frame method), [1] setStaticFilename() (pyCGM2.Model.model.Model method), [1] setStaticFrame() (pyCGM2.Model.model.Referential method), [1] setStaticIkTargets() (pyCGM2.Model.CGM2.cgm2.CGM2_2 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_3 method), [1] setStaticTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM method), [1] SetSubjectActive() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) SetSubjectParam() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setSubjInfo() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method), [1] (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method), [1] setThresholdFromOtherAnalysis() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method), [1] setTitle() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] SetTrajectory() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) SetTrajectoryAtFrame() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setTranslation() (pyCGM2.Model.frame.Frame method), [1] SetTrialRegionOfInterest() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method) setVersion() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] setViewer() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] setYlimits() (pyCGM2.Report.plotFilters.PlottingFilter method), [1] smartAppendAnalog() (in module pyCGM2.Tools.btkTools), [1] smartAppendParamAnalysis() (in module pyCGM2.Tools.btkTools), [1] smartAppendPoint() (in module pyCGM2.Tools.btkTools), [1] smartCreateEvent() (in module pyCGM2.Tools.btkTools), [1] smartGetEvents() (in module pyCGM2.Tools.btkTools), [1] smartGetMetadata() (in module pyCGM2.Tools.btkTools), [1] smartReader() (in module pyCGM2.Tools.btkTools), [1] smartSetMetadata() (in module pyCGM2.Tools.btkTools), [1] smartTrcExport() (in module pyCGM2.Model.Opensim.osimProcessing), [1] smartWriter() (in module pyCGM2.Tools.btkTools), [1] sortedEvents() (in module pyCGM2.Tools.btkTools), [1] SpatioTemporalPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1] spatioTemporelParameter_descriptiveStats() (in module pyCGM2.Processing.cycle), [1] StaticCalibrationProcedure (class in pyCGM2.Model.modelFilters), [1] sto2pointValues() (in module pyCGM2.Model.Opensim.osimProcessing), [1] stpHorizontalHistogram() (in module pyCGM2.Report.plot), [1] SubjectMp() (in module pyCGM2.QTM.qtmTools), [1] SubmitSplineTrajectory() (pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus.ViconNexus method)

T

TechnicalReferential (class in pyCGM2.Model.model), [1] TemporalEmgPlotViewer (class in pyCGM2.Report.Viewers.emgPlotViewers), [1] TemporalKinematicsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1]

TemporalKineticsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers), [1] temporalPlot() (in module pyCGM2.Report.plot), [1] ThoraxProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures), [1] toBool() (in module pyCGM2.Utils.utils), [1]

U

UniqueBtkAcqSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures), [1] UniqueC3dSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures), [1] UnithanCoActivationProcedure (class in pyCGM2.EMG.coactivationProcedures), [1] update() (pyCGM2.Model.frame.Frame method), [1] (pyCGM2.Tools.pythonTools.ordict method), [1]

updateAxisFromRotation() (pyCGM2.Model.frame.Frame method), [1] updateMarkerWeight() (pyCGM2.Model.Opensim.opensimFilters.CgmOpensimFittingProcedure method), [1] updateNode() (pyCGM2.Model.frame.Frame method), [1] updateSegmentFromCopy() (pyCGM2.Model.model.Model method), [1]

V

values() (pyCGM2.Tools.pythonTools.ordict method), [1] VCMJointCentre() (in module pyCGM2.Model.modelDecorator), [1] viconExport() (pyCGM2.Model.CGM2.cgm.CGM1 method), [1] (pyCGM2.Model.CGM2.cgm2.CGM2_4 method), [1]

ViconNexus (class in pyCGM2.External.NexusSDK.viconnexusapi.ViconNexus) ViconNexusException

W

Write() (pyCGM2.External.NexusSDK.viconnexusutils.NexusObject.NexusObject method)

X

XlsAnalysisExportFilter (class in pyCGM2.Processing.exporter), [1]

XlsExportDataFrameFilter (class in pyCGM2.Processing.exporter), [1]

Z

zeni() (in module pyCGM2.Lib.eventDetector) ZeniProcedure (class in pyCGM2.Events.eventProcedures), [1]

zeroingExternalDevice() (pyCGM2.Model.model.Segment method), [1] zeroingProximalWrench() (pyCGM2.Model.model.Segment method), [1]